Experimental Technique (by Laboratories)

-Genome Evolution • Kurokawa Group
Fast and accurate taxonomic assignment tool of metagenomic dataVITCOMIC2
Latent environment allocation of microbial community dataLEA
Ultra-fast amino acid sequence similarity search server against public metagenomesPZLAST
-Genome Diversity • Mori Group
Ultra-fast amino acid sequence similarity search server against public metagenomesPZLAST
-Genome Informatics • Nakamura Group
‘one-click’ identification of causative on webMudi
Prokaryotic genome annotation pipeline for data submission to DDBJDFAST
-Brain Function • Hirata Group
Neuronal birthdate tagging method
“NeuroGT Database”, a brain atlas of neurogenic tagging CreER driversNeuroGT
-Molecular and Developmental Biology • Kawakami Group
Seeing the visual world in the brain in real time
Simple and efficient multiple sgRNA expression system in zebrafish
Zebrafish optogenetics illuminates an ALS mystery (Review) * Collaboration with Tokyo Medical University
Virtual reality system to analyze neural activity and behavior in adult zebrafish
-Mouse Genomics Resource • Koide Group
Development of a freeware that enables automatic characterization of social behavior in mice
-Microbial Physiology • Niki Group
High efficient cloning technology using iVEC method
-Plant Cytogenetics • Nonomura Group
Visualization of autophagy
3D analysis of complex structures in living things (Research paper)(You can see the 3D images of several organisms.)
-Mammalian Development • Saga Group
Simple non-arbitrary method to quantify fluorescent images
Genetics without making mouse lines
-Model Fish Genetics • Sakai Group
Differentiation of zebrafish spermatogonial stem cells to functional sperm in culture.
-Mammalian Genetics • Shiroishi Group *Now operated at RIKEN BRC
User-friendly NIG mouse genome databaseNIG_MoG
Release of an upgraded NIG-Mouse Genome Database, “NIG_MoG2”, to the publicNIG_MoG2
-DNA Data Analysis • Ikeo Group
One-stop platform for NGS data analysisMaser
-Human Genetics • Inoue Group
Systematic identification of regulatory elements derived from human endogenous retrovirusesdbHERV-REs
Comprehensive discovery of CRISPR-targeted terminally redundant sequences
-Molecular Cell Engineering • Kanemaki Group
AID2 (an improved AID system) enables rapid target degradation in yeast, mammalian cells, and mice (protocol)(review)
Simple method for generation of yeast conditional mutants by use of the AID technology
New toolkit for tagging and a degradation inhibitor for the AID system
-Genome Dynamics • Maeshima Group
Development of a New Method for Synthesis of Tandem Hairpin Pyrrole (Cultured cell) (Tissue section)
Method for telomere-specific chromatin capture

Database Center for Life Science (DBCLS)
CRISPRdirect — Rational design of CRISPR/Cas target*
Reference expression dataset -40 organs dataset, 4 different methods, with BodyParts 3D*
*These tools are developed jointly with the National Bioscience Database Center (NBDC) of JST.

NIG Collaboration Grants

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