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2022/05/13

The egg is not a simple ellipsoid

The extra-embryonic space and the local contour are critical geometric constraints regulating cell arrangement

*Sungrim Seirin-Lee, Kazunori Yamamoto, *Akatsuki Kimura
*Corresponding authors

Development (2022) 149, dev200401 DOI:10.1242/dev.200401

Press release (In Japanese only)

Arrangement of cells which defines how cells contact each other is important in developmental processes. The mechanisms determining cell arrangement can be classified into three factors: orientation of cell division, interaction between cells, and geometrical constraints provided by surrounding structures where cells are confined such as the eggshell. Among these factors, the contribution of geometrical constrains have been less explored. Many of theoretical and experimental approaches exploring cell arrangements inside the eggshell have assumed the eggshell as a pure ellipsoidal shape. In this study, the authors developed a computational model based on a phase-field method that can incorporate the real shape of the eggshells. Using this model and the experimental data obtained with the nematode Caenorhabditis elegans embryo, the authors showed that an arrangement observed in vivo can be explained by the real shape but not by an ellipsoid. Extending this finding, the authors found the amount of the extra-embryonic space (ES), the empty space within the eggshell not occupied by embryonic cells, is critical to define cell arrangement. The study proposed that the local features of geometric constraints such as the ES, play important roles in cell arrangement, which should be important for any multicellular systems.

Figure1
Figure: 1A) A 4-cell stage C. elegans embryo with “T-reverse” arrangement. The four cells are arranged as the shape of the letter “T”, as indicated by yellow dotted lines.
1B) A simulation reproducing the T-reverse arrangement. (Upper) A simulation incorporating the real shape of the eggshell reproduced the T-reverse arrangement. (Lower) A simulation with an ellipsoidal eggshell did not show the T-reverse arrangement, but a “Diamond” arrangement.
2) Increasing the amount of the ES changed the cell arrangement. 2A) In the case of ES=10%. The diamond arrangement was observed in simulation (upper) and in real embryo (lower).
2B) In the case of ES=20%. A linear arrangement was observed in simulation (upper) and in real embryo (lower).
2022/05/06

Prof. Kanemaki’s News and Views was published in Nature. “A rethink about enzymes that drive DNA replication”

Prof. Kanemaki’s News and Views on the recent finding on DNA replication was published in Nature.
A rethink about enzymes that drive DNA replication

Comment from Prof. Kanemaki:

I wrote a short review article about a new paper published in Nature. It has been believed that two kinases, CDC7 and CDK2, drive DNA replication. However, this paper showed that either CDC7 or CDK1 suffices for driving DNA replication in mouse and human cells. In addition, the auxin-inducible degron (AID) that my group developed was used in this research.

Kanemaki Group • Molecular Cell Engineering Laboratory


2022/05/06

Cell Nucleus issue of Current Opinion in Cell Biology edited by Prof. Maeshima has been published.

Cell Nucleus

A special issue on Cell Nucleus of Current Opinion in Cell Biology edited by Prof. Kazuhiro Maeshima at Genome Dynamics Laboratory and Prof. Eran Meshorer, Hebrew University of Israel, has been published.

There are 11 review articles on cell nuclei in Vol. 74, published in February 2022, and 4 articles in Vol. 75, published in April 2022.
https://www.sciencedirect.com/journal/current-opinion-in-cell-biology/vol/74/suppl/C
https://www.sciencedirect.com/journal/current-opinion-in-cell-biology/vol/75/suppl/C

Vol. 74 includes “Ligand-induced degrons for studying nuclear functions” by NIG Prof. Masato Kanemaki and also a review paper on plant chromatin organization by NIG Visiting Professor Frederic Berger.
https://www.sciencedirect.com/science/article/pii/S0955067421001228
https://www.sciencedirect.com/science/article/pii/S0955067421001186

Genome Dynamics Laboratory (Maeshima Laboratory)


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