NIG is actively working on a variety of cooperation with other universities and institutions through academic exchange agreements in order to promote research collaborations and education.
| Institute | Month/Year of Agreement | Country | 
| Domestic | ||
|---|---|---|
| Shizuoka University | Mar 2014 | Japan | 
| Tokyo University of Agriculture | Aug 2016 | Japan | 
| National Institute of Technology(KOSEN), Numazu College | Mar 2020 | Japan | 
| Kazusa DNA Research Institute | May 2020 | Japan | 
| Overseas | ||
| University of Melbourne | Jul 2015 | Australia | 
| College of Life Science, National Taiwan University | May 2018 | Taiwan | 
| Universiti Kebangsaan Malaysia | Jun 2018 | Malaysia | 
| Brain Research Institute Monash Sunway, Monash University | Jun 2018 | Malaysia | 
| Department of Agricultural and Food Sciences, University of Bologna  | Feb 2019 | Italy | 
| University of Ghana | Jun 2019 | Ghana | 
| IPB University | Nov 2020 | Indonesia | 
| Indonesian Institute of Sciences (LIPI) | Dec 2020 | Indonesia | 
| Korea Research Institute of Bioscience and Biotechnology | Mar 2021 | Korea | 
| Institute of Ecology and Biological Resources (IEBR) | Aug 2021 | Vietnam | 
| University of Madras | Sep 2022 | India | 
| University of Mataram | Feb 2023 | Indonesia | 
| Kasetsart University | Mar 2023 | Thailand | 
| Nile University | Mar 2023 | Egypt | 
| Institut Teknologi Bandung | Oct 2024 | Indonesia | 
| Jahangirnagar University | Nov 2024 | Bangladesh |