NIG Supercomputer System
NIG Supercomputer System
National Institute of Genetics (NIG) operates a supercomputer system to develop the International Nucleotide Sequence Database (INSD) and to provide computational resources to domestic researchers.
The key features of the NIG Supercomputer System are the analysis environment specialized to life science research and the comprehensiveness of public data.In 2018 we install a large-scale storage system and in 2019 we replaced the old computer system to analyze massive-scale data such as full human genomes that our JGA repository provides (See table below).
Domestic researchers can request for a user account throughout the year, and the cost is free for users of less than 30 TB disk usage.Large-scale users exceeding this threshold must pay a prorated volume fee, and other options to rent computation nodes are available for a fee.
Every year, average 1700 users from 150 institutions register to our computing environment.For details, please visit our website (https://sc.ddbj.nig.ac.jp/).
The Personal Genome Analysis Section has obtained ISO27001 (Information Security Management System: ISMS) certification in 2023.
| 2012年導入スパコン | 2019年導入スパコン (2012年導入分は撤去) | 2020年以降の増強 | |
|---|---|---|---|
| 計算機システム | 計算機システム554台 | 計算機システム 204台 AMD EPYC 512GB×136 Intel Xeon Gold 384GB×68 | (2020年4月) AMD EPYC Rome 7702 3,584 CPUコア増強 合計14,336 CPUコア |
| 特殊用途の計算機 | 10TB メモリ計算機×1 2TB メモリ計算機×10 | 12TB メモリ計算機×1 3TB メモリ計算機×10 (いずれもIntel Xeon Gold) | 該当なし |
| 計算用高速ストレージ | 7PB | 2019年導入分 10PB 2018年導入分 3.8PB | (2021年4月) 3.5PB増強。 合計17.1PB |
| データベース用ストレージ | 5.6PB | ディスク 15PB テープ 15PB | (2023年3月リプレース) ディスク 40PB バックアップ用テープ 15PB |
| ノード間相互結合網 | InfiniBand 4xQDR (40Gbps), 4×FDR (56Gbps) | InfiniBand 4×EDR (100Gbps) | 該当なし |
導入計算機システム概要