Araki Group • Microbial Genetics Laboratory

Molecular mechanism of eukaryotic DNA replication in the cell cycle



Research Summary

Eukaryotic chromosome DNA is replicated exactly only once per cell cycle and segregated to daughter cells. This process ensures cells to transmit accurate genomic information to their progeny. Eukaryotic DNA replication initiates from multiple sites, called replication origins, scattered throughout chromosomes and this initiation process is strictly regulated by the cell cycle. However, molecular mechanism of DNA replication and its regulation in eukaryotic cell cycle have not been well elucidated. To approach this subject, we have isolated novel replication factors of budding yeast and analyzed their functions.

(A) AFM image of ORC-chromatin complexes. ORC (origin recognition complex) binds to replication origins, where DNA replication is initiated. We revealed that chromatin structure stabilizes origin-ORC interaction. (B) Origin association of the low abundance replication proteins Sld3, Sld7, and Cdc45 is the key to determining the temporal order of origin firing. Simultaneous over-expression of these proteins (“ON” in the figure) allows the late-firing origins to fire earlier in S phase (arrow in the figure).

Selected Publications

Hizume K, Endo S, Muramatsu S, Kobayashi T, Araki H. DNA polymerase ε-dependent modulation of the pausing property of the CMG helicase at the barrier. Genes Dev. 2018 Oct 1;32(19-20):1315-1320.

Miyazawa-Onami M, Araki H, Tanaka S. Pre-initiation complex assembly functions as a molecular switch that splits the Mcm2-7 double hexamer. EMBO Rep. 2017 Oct;18(10):1752-1761.

Hizume K, Kominami H, Kobayashi K, Yamada H, Araki H. Flexible DNA Path in the MCM Double Hexamer Loaded on DNA. Biochemistry. 2017 May 16;56(19):2435-2445.

Itou H, Shirakihara Y, Araki H. The quaternary structure of the eukaryotic DNA replication proteins Sld7 and Sld3. Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1649-56.

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